STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52968.1Hypothetical protein. (3754 aa)    
Predicted Functional Partners:
ABP52994.1
PFAM: helix-turn-helix domain protein.
  
     0.744
ABP52957.1
Hypothetical protein.
 
   
 0.734
ABP52966.1
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
    0.676
ABP53996.1
Hypothetical protein.
 
   
 0.637
ABP52967.1
Hypothetical protein.
       0.634
ABP52790.1
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Kelch repeat-containing protein; Kelch repeat protein.
      
 0.628
ABP56000.1
PFAM: peptidase M16 domain protein.
      
 0.628
ABP55634.1
Hypothetical protein.
  
     0.618
ABP52969.1
Hypothetical protein.
       0.614
ABP52970.1
Hypothetical protein.
       0.605
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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