STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP53279.1Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator. (368 aa)    
Predicted Functional Partners:
ABP55601.1
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
    
 
 0.874
ABP55273.1
PFAM: condensation domain protein.
    
 
 0.778
ABP53497.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding.
    
 
 0.771
ABP55267.1
PFAM: condensation domain protein.
    
 
 0.771
ABP56848.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
    
 
 0.771
ABP53278.1
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
  
 0.644
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY.
 
 
 
 0.474
ABP56538.1
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
  
 
 
 0.469
ABP55498.1
TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.459
ABP53280.1
PFAM: extracellular solute-binding protein, family 1.
 
   
 0.458
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.