STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP53832.1Hypothetical protein. (149 aa)    
Predicted Functional Partners:
ABP53833.1
Hypothetical protein.
  
    0.899
ABP52782.1
PFAM: protein of unknown function DUF1416.
  
     0.759
ABP54343.1
Hypothetical protein.
  
     0.691
ABP55032.1
Hypothetical protein.
  
     0.679
ABP55922.1
Hypothetical protein.
  
     0.657
ABP56795.1
Hypothetical protein.
  
     0.635
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.629
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
       0.629
ABP55702.1
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.619
ABP56249.1
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
     0.614
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.