STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54133.1PFAM: extracellular solute-binding protein, family 5. (510 aa)    
Predicted Functional Partners:
ABP54134.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.992
ABP54135.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.975
ABP56765.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.952
ABP52702.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.918
ABP55096.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.892
ABP52703.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.860
ABP55095.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.846
ABP54136.1
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.834
ABP56253.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.834
ABP56228.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.830
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.