STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54713.1L-erythro-3,5-diaminohexanoate dehydrogenase. (353 aa)    
Predicted Functional Partners:
ABP54716.1
D-lysine 5,6-aminomutase beta subunit / beta-lysine 5,6-aminomutase beta subunit; PFAM: cobalamin B12-binding domain protein.
 
 
 0.995
ABP54715.1
D-lysine 5,6-aminomutase alpha subunit / beta-lysine 5,6-aminomutase alpha subunit.
 
 
  0.994
ABP52799.1
3-keto-5-aminohexanoate cleavage enzyme; PFAM: protein of unknown function DUF849.
 
  
  0.979
ABP54718.1
Hypothetical protein.
 
     0.948
ABP54717.1
3-aminobutyryl-CoA ammonia-lyase.
 
     0.914
ABP54712.1
L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein.
 
     0.887
ABP54714.1
PFAM: Amidohydrolase 3.
       0.712
ABP56845.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.485
ABP55493.1
TIGRFAM: thioester reductase domain; PFAM: GCN5-related N-acetyltransferase; beta-ketoacyl synthase; AMP-dependent synthetase and ligase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; phosphopantetheine-binding; Male sterility C-terminal domain.
  
  
 0.484
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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