STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55391.1Hypothetical protein. (344 aa)    
Predicted Functional Partners:
ABP55307.1
Hypothetical protein.
  
     0.733
ABP55308.1
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.702
ABP52994.1
PFAM: helix-turn-helix domain protein.
  
     0.602
ABP54648.1
PFAM: cyclase/dehydrase.
  
     0.581
ABP55332.1
PFAM: regulatory protein, TetR.
  
     0.563
ABP55210.1
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
  
    0.534
ABP55390.1
Hypothetical protein; Belongs to the CoaE family.
       0.486
ABP53346.1
Hypothetical protein.
   
 
 0.480
ABP54452.1
Hypothetical protein.
  
     0.467
ABP54632.1
PFAM: NDP-hexose 2,3-dehydratase.
  
     0.466
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.