STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax9Paired box 9. (336 aa)    
Predicted Functional Partners:
LOC108237060
Paired box 10.
 
    
 0.803
meox2
Mesenchyme homeobox 2a.
    
 
 0.650
msx1
Muscle segment homeobox 1a.
    
 
 0.620
sox5
SRY-box transcription factor 5.
      
 0.463
ENSKMAP00000012068
Uncharacterized protein.
      
 0.461
Nfe2
Nuclear factor, erythroid 2.
      
 0.453
hand2
Heart and neural crest derivatives expressed 2.
      
 0.444
nkx3-2
NK3 homeobox 2.
      
 0.444
pitx2
Homeobox protein.
   
  
 0.416
LOC108228750
Uncharacterized protein.
   
  
 0.410
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.