LOC108232121 protein (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108232121

5'-nucleotidase, cytosolic IAb. (379 aa)

Predicted Functional Partners:

leo1

0.867

ENSKMAP00000024388

0.653

smim12

0.638

bbs9

0.625

bbs7

0.612

cdc73

0.594

anapc5

0.591

cdc16

0.590

anapc4

0.587

anapc1

0.587

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000024388	LOC108232121	ENSKMAP00000024388	ENSKMAP00000019759	TROVE domain-containing protein.	5'-nucleotidase, cytosolic IAb.	0.653
ENSKMAP00000024388	anapc1	ENSKMAP00000024388	ENSKMAP00000022772	TROVE domain-containing protein.	Anaphase promoting complex subunit 1.	0.599
ENSKMAP00000024388	anapc4	ENSKMAP00000024388	ENSKMAP00000017617	TROVE domain-containing protein.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.623
ENSKMAP00000024388	anapc5	ENSKMAP00000024388	ENSKMAP00000016096	TROVE domain-containing protein.	Anaphase promoting complex subunit 5.	0.594
ENSKMAP00000024388	cdc16	ENSKMAP00000024388	ENSKMAP00000005686	TROVE domain-containing protein.	Cell division cycle 16 homolog (S. cerevisiae).	0.631
ENSKMAP00000024388	cdc73	ENSKMAP00000024388	ENSKMAP00000006471	TROVE domain-containing protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.851
ENSKMAP00000024388	leo1	ENSKMAP00000024388	ENSKMAP00000002496	TROVE domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.991
LOC108232121	ENSKMAP00000024388	ENSKMAP00000019759	ENSKMAP00000024388	5'-nucleotidase, cytosolic IAb.	TROVE domain-containing protein.	0.653
LOC108232121	anapc1	ENSKMAP00000019759	ENSKMAP00000022772	5'-nucleotidase, cytosolic IAb.	Anaphase promoting complex subunit 1.	0.587
LOC108232121	anapc4	ENSKMAP00000019759	ENSKMAP00000017617	5'-nucleotidase, cytosolic IAb.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.587
LOC108232121	anapc5	ENSKMAP00000019759	ENSKMAP00000016096	5'-nucleotidase, cytosolic IAb.	Anaphase promoting complex subunit 5.	0.591
LOC108232121	bbs7	ENSKMAP00000019759	ENSKMAP00000011638	5'-nucleotidase, cytosolic IAb.	Bardet-Biedl syndrome 7.	0.612
LOC108232121	bbs9	ENSKMAP00000019759	ENSKMAP00000023428	5'-nucleotidase, cytosolic IAb.	Bardet-Biedl syndrome 9.	0.625
LOC108232121	cdc16	ENSKMAP00000019759	ENSKMAP00000005686	5'-nucleotidase, cytosolic IAb.	Cell division cycle 16 homolog (S. cerevisiae).	0.590
LOC108232121	cdc73	ENSKMAP00000019759	ENSKMAP00000006471	5'-nucleotidase, cytosolic IAb.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.594
LOC108232121	leo1	ENSKMAP00000019759	ENSKMAP00000002496	5'-nucleotidase, cytosolic IAb.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.867
LOC108232121	smim12	ENSKMAP00000019759	ENSKMAP00000024296	5'-nucleotidase, cytosolic IAb.	Small integral membrane protein 12.	0.638
anapc1	ENSKMAP00000024388	ENSKMAP00000022772	ENSKMAP00000024388	Anaphase promoting complex subunit 1.	TROVE domain-containing protein.	0.599
anapc1	LOC108232121	ENSKMAP00000022772	ENSKMAP00000019759	Anaphase promoting complex subunit 1.	5'-nucleotidase, cytosolic IAb.	0.587
anapc1	anapc4	ENSKMAP00000022772	ENSKMAP00000017617	Anaphase promoting complex subunit 1.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.999