STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdca7Cell division cycle associated 7a. (404 aa)    
Predicted Functional Partners:
rad17
RAD17 checkpoint clamp loader component.
   
 0.931
hus1
Checkpoint protein; Belongs to the HUS1 family.
    
 0.930
rad1
RAD1 homolog (S. pombe).
    
 0.930
rfc2
Replication factor C (activator 1) 2.
   
 0.922
rfc3
Replication factor C (activator 1) 3.
   
 0.901
rfc4
Replication factor C (activator 1) 4.
   
 0.899
slf1
SMC5-SMC6 complex localization factor 1.
    
 0.889
rfc5
Replication factor C (activator 1) 5.
   
 0.880
topbp1
DNA topoisomerase II binding protein 1.
    
 0.801
exo1
Exonuclease 1.
   
 0.745
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.