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STRINGSTRING
RABA3 protein (Arabidopsis thaliana) - STRING interaction network
"RABA3" - Ras-related protein RABA3 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABA3Ras-related protein RABA3; Intracellular vesicle trafficking and protein transport (237 aa)    
Predicted Functional Partners:
AT2G20050
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein; Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases; Its function is described as cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding; Involved in protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphoryl [...] (1094 aa)
   
 
  0.815
VHA-A1
V-type proton ATPase subunit a1; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Required during cell expansion; Belongs to the V-ATPase 116 kDa subunit family (817 aa)
     
 
  0.810
AT3G18620
DHHC-type zinc finger family protein; S-acyltransferase involved in protein lipid modification; Belongs to the DHHC palmitoyltransferase family (345 aa)
       
 
  0.732
AT4G24090
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 23 plant structures; Expressed during 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species- Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink) (308 aa)
           
  0.714
AT4G27700
Rhodanese/Cell cycle control phosphatase superfamily protein; Its function is described as molecular_function unknown; Involved in aging; Located in chloroplast thylakoid membrane, chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Rhodanese-like (InterPro-IPR001763); BEST Arabidopsis thaliana protein match is- Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR-AT3G08920.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5 [...] (224 aa)
           
  0.708
VPS9A
Vacuolar protein sorting-associated protein 9A; Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1 (520 aa)
       
 
  0.680
SNX2b
Sorting nexin 2B; Plays a role in vesicular protein sorting. Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport (572 aa)
       
 
  0.679
DER2.1
DERLIN-2.1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
 
  0.668
DER2.2
DERLIN-2.2; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
 
  0.668
SNX2a
Sorting nexin 2A; Plays a role in vesicular protein sorting (By similarity). Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport (By similarity). Also involved in the efficient sorting of seed storage protein globulin 12S (587 aa)
       
 
  0.655
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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