STRINGSTRING
AT1G01230 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G01230" - ORMDL-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G01230ORMDL-like protein (157 aa)    
Predicted Functional Partners:
AT5G11420
Uncharacterized protein (366 aa)
           
  0.808
AT5G58787
RING/U-box superfamily protein (242 aa)
           
  0.738
LCB1
Long-chain base1; Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis (482 aa)
     
 
  0.729
CSLB04
Cellulose synthase-like B4; Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall (755 aa)
           
  0.635
AT2G38010
Neutral ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid (792 aa)
           
  0.632
LCBK2
Long-chain base (LCB) kinase 2; Involved in the production of sphingoid long-chain base (LCB). Is required for the cold-induced accumulation of phytosphingosine-phosphate, the regulation of the cold-responsive MPK6 and reduction of root growth at moderate low temperature (364 aa)
           
  0.630
AT3G29270
RING/U-box superfamily protein (263 aa)
     
      0.614
DGL1
DEFECTIVE GLYCOSYLATION; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (437 aa)
       
      0.612
AT5G17250
Alkaline-phosphatase-like protein (925 aa)
       
      0.612
SPT1
Serine palmitoyltransferase 1; Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core. Plays an important role during male gametogenesis and embryogenesis (489 aa)
     
 
  0.610
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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