• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G01320 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G01320" - Tetratricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G01320Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species- Archae - 106; Ba [...] (1797 aa)    
Predicted Functional Partners:
PTAC16
Protein plastid transcriptionally active 16, chloroplastic; Probably involved in the regulation of plastid gene expression; Belongs to the NAD(P)-dependent epimerase/dehydratase family (510 aa)
     
        0.920
ABC4
2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic; Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport (382 aa)
     
        0.908
AT2G36145
Uncharacterized protein At2g36145; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast thylakoid membrane, chloroplast stroma, chloroplast; Expressed in 19 plant structures; Expressed during 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (186 aa)
     
        0.905
AT2G24060
Translation initiation factor IF3-2, chloroplastic; Chloroplast translation initiation factor that is essential for the coordination of leaf and chloroplast development. IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity) (312 aa)
     
        0.783
NPQ1
Violaxanthin de-epoxidase, chloroplastic; Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light- harvesting protein complex of photosystem II; Belongs to the calycin superfamily. Lipocalin family (462 aa)
     
        0.769
AT4G30690
Translation initiation factor IF3-4, chloroplastic; Chloroplast translation initiation factor that is essential for the coordination of leaf and chloroplast development. IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity) (281 aa)
     
        0.743
FBX5
ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings (930 aa)
           
  0.739
AT5G43960
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in transport, nucleocytoplasmic transport; Located in intracellular; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nuclear transport factor 2 (InterPro-IPR002075), RNA recognition motif, RNP-1 (InterPro-IPR000504), Nuclear transport factor 2, Eukaryote (InterPro-IPR018222), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST A [...] (450 aa)
       
 
  0.738
ATG18G
Homolog of yeast autophagy 18 (ATG18) G; The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity); Belongs to the WD repeat SVP1 family (959 aa)
           
  0.733
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein; Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues (1819 aa)
     
   
0.707
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (14%) [HD]