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AGL28 protein (Arabidopsis thaliana) - STRING interaction network
"AGL28" - Agamous-like MADS-box protein AGL28 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGL28Agamous-like MADS-box protein AGL28; Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway (247 aa)    
Predicted Functional Partners:
AGL36
Agamous-like MADS-box protein AGL36; Probable transcription factor (366 aa)
       
 
  0.904
PHE1
MADS-box transcription factor family protein; Type I MADS-box protein, regulated by MEA and FIE, expressed transiently after fertilization in embryo and endosperm (279 aa)
     
 
  0.890
AGL90
Agamous-like MADS-box protein AGL90; Probable transcription factor (320 aa)
           
  0.753
AGL38
MADS-box transcription factor PHERES 2; Probable transcription factor involved in the development of gametophytes and seeds (278 aa)
       
 
  0.727
AT5G54350
C2H2-type zinc finger protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; BEST Arabidopsis thaliana protein match is- C2H2-like zinc finger protein (TAIR-AT5G54360.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (261 aa)
     
   
  0.714
AT5G46300
Unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (208 aa)
     
   
  0.711
AT5G46950
Plant invertase/pectin methylesterase inhibitor superfamily protein; Its function is described as enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Pectinesterase inhibitor (InterPro-IPR006501); BEST Arabidopsis thaliana protein match is- Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR-AT5G46960.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; [...] (174 aa)
           
  0.699
SK8
SKP1-like protein 8; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (152 aa)
           
  0.699
AT1G20730
Transport/golgi organization-like protein, putative (DUF833); Protein of unknown function (DUF833); Contains the following InterPro domains- Protein of unknown function DUF833 (InterPro-IPR008551); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF833) (TAIR-AT1G20740.1); Has 432 Blast hits to 427 proteins in 156 species- Archae - 0; Bacteria - 238; Metazoa - 13; Fungi - 0; Plants - 127; Viruses - 2; Other Eukaryotes - 52 (source- NCBI BLink) (256 aa)
           
  0.699
AT5G03020
Galactose oxidase/kelch repeat superfamily protein; Contains the following InterPro domains- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- Galactose oxidase/kelch repeat superfamily protein (TAIR-AT5G03000.1); Has 6713 Blast hits to 4194 proteins in 283 species- Archae - 8; Bacteria - 340; Metazoa - 4606; Fungi - 65; Plants - 1341; Viruses - 147; Other Eukaryotes - 206 (source- NCBI BLink) (347 aa)
           
  0.697
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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