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PFC1 protein (Arabidopsis thaliana) - STRING interaction network
"PFC1" - PALEFACE 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFC1PALEFACE 1; Required for methylation of the 3’ adenosines in the small subunit of plastid rRNA. Essential for chloroplast biogenesis at low temperatures (343 aa)    
Predicted Functional Partners:
AT1G31660
Putative bystin (444 aa)
     
 
  0.998
AT3G13230
RNA-binding protein PNO1 (215 aa)
     
 
  0.998
AT3G21540
transducin/WD40 domain-containing protein (955 aa)
     
      0.998
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
 
  0.995
SWA1
SLOW WALKER1; Essential protein required for nuclear division and organization during embryo sac development in female gametophyte, probably by promoting rRNA biogenesis essential for the progression of the mitotic division cycles during gametogenesis (PubMed-15634699, PubMed-15980260). Involved in nucleolar processing of pre-18S ribosomal RNA (PubMed-15980260) (530 aa)
     
      0.991
AT1G25260
Ribosomal protein L10 family protein (235 aa)
   
 
  0.990
AT5G04600
RNA recognition motif-containing protein (222 aa)
     
 
  0.990
PWP2
Periodic tryptophan protein 2 (900 aa)
     
      0.988
MEE49
Maternal effect embryo arrest 49 (343 aa)
     
      0.988
AT4G15770
RNA binding; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
   
  0.988
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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