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RA-5 protein (Arabidopsis thaliana) - STRING interaction network
"RA-5" - Ras-related protein RABD2a in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
RA-5Ras-related protein RABD2a; Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (203 aa)    
Predicted Functional Partners:
AT5G54750
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (199 aa)
     
  0.996
AT1G51160
Uncharacterized protein At1g51160; SNARE-like superfamily protein; Its function is described as molecular_function unknown; Involved in transport, ER to Golgi vesicle-mediated transport; Located in cis-Golgi network; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sybindin-like protein (InterPro-IPR007233), Longin-like (InterPro-IPR011012); BEST Arabidopsis thaliana protein match is- SNARE-like superfamily protein (TAIR-AT5G02280.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Meta [...] (169 aa)
     
  0.990
AT5G02280
Uncharacterized protein At5g02280; SNARE-like superfamily protein; Its function is described as molecular_function unknown; Involved in transport, ER to Golgi vesicle-mediated transport; Located in cis-Golgi network; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Sybindin-like protein (InterPro-IPR007233), Longin-like (InterPro-IPR011012); BEST Arabidopsis thaliana protein match is- SNARE-like superfamily protein (TAIR-AT1G51160.2); Has 567 Blast hits to 560 proteins in 204 species- Archae - 0; Bacteria - 0; Metazoa - 227; [...] (141 aa)
       
  0.989
AT5G58030
Transport protein particle (TRAPP) component; Contains the following InterPro domains- Transport protein particle (TRAPP) component (InterPro-IPR007194), TRAPP I complex, Trs31 (InterPro-IPR016696); Has 560 Blast hits to 545 proteins in 219 species- Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink) (195 aa)
     
  0.988
GDI2
Guanosine nucleotide diphosphate dissociation inhibitor 2; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP (444 aa)
     
  0.987
GDI
GDP dissociation inhibitor family protein / Rab GTPase activator family protein; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP (445 aa)
     
  0.985
GDI1
Guanosine nucleotide diphosphate dissociation inhibitor 1; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family (445 aa)
     
  0.985
TRS120
Trafficking protein particle complex II-specific subunit 120 homolog; Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells. Required for the polarized and selective transport of PIN2 and probably PIN1 to the plasma membrane. Not required for ER- to-Golgi as well as biosynthetic and endocytic vacuolar transport (1186 aa)
       
  0.981
GC6
Golgin candidate 6; This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein (914 aa)
     
  0.978
RGTB2
Geranylgeranyl transferase type-2 subunit beta 2; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2. In vitro, can prenylate PGGTI targets with the C-terminal sequence Cys- aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the beta subunit is associated with the alpha subunit RGTA1 (317 aa)
     
  0.975
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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