STRINGSTRING
AT1G02150 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G02150" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G02150Pentatricopeptide repeat-containing protein (524 aa)    
Predicted Functional Partners:
AT3G06980
DEAD-box ATP-dependent RNA helicase 50; Probably involved in resistance to biotic and abiotic stresses (781 aa)
     
        0.786
AT5G42440
Protein kinase family protein (359 aa)
           
  0.772
AT3G18310
Uncharacterized protein (873 aa)
           
  0.772
AT1G66530
arginyl-tRNA synthetase; Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis (590 aa)
           
  0.749
RPL4
Ribosomal protein L4; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation (282 aa)
     
   
  0.720
AT3G08740
Elongation factor EF-P (236 aa)
     
        0.685
RHON1
Rho-N 1; Binds to and supports processing of specific plastid RNAs. Associates via its C-terminal Rho-N domain to single stranded regions of 16S and 23S rRNAs or to rbcL mRNAs. May be involved in targeting transcripts to RNases such as RNE or RNase J (401 aa)
     
        0.684
emb2726
Embryo defective 2726; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (953 aa)
     
        0.674
DEG2
Protease Do-like 2; Serine protease that performs the primary cleavage of the photodamaged D1 protein in plant photosystem II (607 aa)
     
        0.665
AT2G43030
50S ribosomal protein L3-1; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
     
   
  0.642
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (7%) [HD]