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AT1G02270 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G02270" - Uncharacterized calcium-binding protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G02270Uncharacterized calcium-binding protein (484 aa)    
Predicted Functional Partners:
AT1G02080
Transcription regulators (2431 aa)
     
 
  0.925
AT4G29640
Cytidine/deoxycytidylate deaminase-like protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (346 aa)
           
  0.922
AT5G18230
CCR4-NOT transcription complex subunit 3 (845 aa)
       
 
  0.790
VIP2
VIRE2 interacting protein 2; Transcriptional regulator required for Agrobacterium- mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression (614 aa)
     
 
  0.744
AT1G07705
NOT2 / NOT3 / NOT5 family (614 aa)
     
 
  0.744
AT1G07700
Thioredoxin-like 4; Probable thiol-disulfide oxidoreductase that may participate in various redox reactions (217 aa)
     
 
  0.744
UVH1
DNA repair endonuclease UVH1; Seems to be involved in nucleotide excision repair (NER) of damaged DNA (dark repair mechanism). Involved in repair of UV light, and probably oxidative damage. The UVH1/RAD1-ERCC1/RAD10 complex may act as an endonuclease making DNA incision 5’ to the lesion site. In vitro, is implicated in double strand breaks (DSBs) repair and is required for homologous recombination in the presence of non-homologous overhangs. May mediate the induction of a DNA-damage sensitive cell-cycle checkpoint during the G2 phase (956 aa)
     
   
  0.738
AT1G61470
Putative CCR4-associated factor 1-5; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (278 aa)
     
 
  0.729
AT1G27820
Putative CCR4-associated factor 1-3; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (310 aa)
     
 
  0.711
CAF1b
CCR4- associated factor 1b; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (278 aa)
     
 
  0.702
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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