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AT1G02475 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G02475" - SRPBCC ligand-binding domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G02475SRPBCC ligand-binding domain-containing protein (219 aa)    
Predicted Functional Partners:
AT1G29530
Uncharacterized protein (236 aa)
     
   
  0.828
AT3G06690
acyl-CoA dehydrogenase domain-containing protein (187 aa)
           
  0.810
AT2G32340
TraB family protein (360 aa)
           
  0.810
AT1G74875
Uncharacterized protein (243 aa)
           
  0.810
AT1G29520
AWPM19-like protein (158 aa)
           
  0.810
CPuORF18
Conserved peptide upstream open reading frame 18 (68 aa)
           
  0.809
CPuORF17
Uncharacterized protein (55 aa)
           
  0.809
AT5G10690
Pentatricopeptide repeat-containing protein (580 aa)
           
  0.805
AT1G56500
Haloacid dehalogenase-like hydrolase domain-containing protein (1055 aa)
     
   
  0.753
AT1G55800
Uncharacterized protein (314 aa)
           
  0.740
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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