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SR34 protein (Arabidopsis thaliana) - STRING interaction network
"SR34" - RNA-binding (RRM/RBD/RNP motifs) family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SR34RNA-binding (RRM/RBD/RNP motifs) family protein; General splicing factor. Can promote splice site selection in vitro presumably by antagonizing the effects of the A1 heterogeneous nuclear ribonucleoprotein. May have an essential function during early plant development; Belongs to the splicing factor SR family. SR subfamily (303 aa)    
Predicted Functional Partners:
SC35
Serine/arginine-rich splicing factor SC35; Probably involved in intron recognition and spliceosome assembly, but not involved in alternative splicing regulation of the SCL33 intron (303 aa)
   
  0.999
RS2Z33
Arginine/serine-rich zinc knuckle-containing protein 33; Splicing factor involved in constitutive and/or alternative splicing. Regulates the splicing of its own pre-mRNA and the alternative splicing of RS30, RS31 and RS34. Associates the cyclin-dependent kinase G1 (CDKG1) with the spliceosome and recruits it to U1 snRNP to facilitate splicing (290 aa)
     
0.999
RSZ21
Serine/arginine-rich splicing factor RSZ21; Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing (187 aa)
   
0.999
SCL30
Serine/arginine-rich SC35-like splicing factor SCL30; Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5’ splice sites (262 aa)
   
 
  0.999
SCL28
Serine/arginine-rich SC35-like splicing factor SCL28; Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5’ splice sites; Belongs to the splicing factor SR family. SCL subfamily (236 aa)
   
 
 
  0.998
U1-70K
U1 small nuclear ribonucleoprotein 70 kDa; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
     
 
0.997
SCL30A
Serine/arginine-rich SC35-like splicing factor SCL30A; Involved in intron recognition and spliceosome assembly. Binds probably to multiple 5’-GAAG-3’ repeats found in its third intron, suggesting autoregulation of alternative splicing. May be necessary for accurate splicing of the 3’ region of introns (262 aa)
   
 
0.997
SR45
Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth (425 aa)
     
  0.992
AT5G64270
Splicing factor, putative; Its function is described as binding; Involved in mRNA processing; Located in chloroplast; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- HEAT (InterPro-IPR000357), Armadillo-like helical (InterPro-IPR011989), Splicing factor 3B subunit 1 (InterPro-IPR015016), HEAT, type 2 (InterPro-IPR021133), Armadillo-type fold (InterPro-IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source [...] (1269 aa)
     
  0.988
CDC5
Cell division cycle 5-like protein; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage; Belongs to the CEF1 family (844 aa)
     
  0.985
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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