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AT1G03440 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G03440" - Leucine-rich repeat in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G03440Leucine-rich repeat (LRR) family protein; Involved in signal transduction; Located in endomembrane system; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro-IPR013210), Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- RNI-like superfamily protein (TAIR-AT4G03010.1); Has 51202 Blast hits to 18238 proteins in 817 species- Archae - 16; Bacteria - 1653; Metazoa - 5878; Fungi - 321; Plants - 40223; Viruses - 0; Other Eukaryotes - [...] (397 aa)    
Predicted Functional Partners:
PIRL6
Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (380 aa)
   
        0.509
AT4G16162
Leucine-rich repeat (LRR) family protein; Located in chloroplast; Contains the following InterPro domains- Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- Leucine-rich repeat transmembrane protein kinase (TAIR-AT1G53420.1); Has 50232 Blast hits to 12190 proteins in 485 species- Archae - 16; Bacteria - 1165; Metazoa - 740; Fungi - 45; Plants - 45367; Viruses - 0; Other Eukaryotes - 2899 (source- NCBI BLink) (176 aa)
   
          0.441
PIRL2
Encodes PIRL2, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (471 aa)
   
          0.424
PIRL5
Encodes PIRL5, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (526 aa)
   
          0.423
PIRL9
Encodes PIRL9, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen (499 aa)
   
          0.422
PIRL1
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen (506 aa)
   
          0.420
PIRL3
Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (464 aa)
   
          0.420
PIRL8
Encodes PIRL8, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (383 aa)
   
          0.415
PIRL7
Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction (373 aa)
   
          0.414
SMU1
Transducin family protein / WD-40 repeat family protein; Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2 (511 aa)
     
      0.409
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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