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STRINGSTRING
AT1G03610 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G03610" - Protein of unknown function in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G03610Protein of unknown function (DUF789); Contains the following InterPro domains- Protein of unknown function DUF789 (InterPro-IPR008507); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF789) (TAIR-AT4G03420.1); Has 266 Blast hits to 262 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (308 aa)    
Predicted Functional Partners:
AT5G57510
Cotton fiber protein; Unknown protein; Has 27 Blast hits to 27 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (130 aa)
           
  0.406
GN
ARF guanine-nucleotide exchange factor GNOM; Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Acts as the major regulator of endosomal vesicle trafficking but is also involved in the endocytosis process. Could function redundantly with GNL1 in the retrograde Golgi to endoplasmic reticulum trafficking. Regulates vesicle trafficking required for the coordinated polar localization of auxin efflux carriers which in turn determines the direction of auxin flow. Mediates the sorting of PIN1 from endosomal compartments to the basal pla [...] (1451 aa)
           
  0.406
AT4G27450
Aluminium induced protein with YGL and LRDR motifs; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cytosol, nucleus, plasma membrane; Expressed in 25 plant structures; Expressed during 14 growth stages; BEST Arabidopsis thaliana protein match is- Aluminium induced protein with YGL and LRDR motifs (TAIR-AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (250 aa)
     
        0.400
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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