STRINGSTRING
PRP39 protein (Arabidopsis thaliana) - STRING interaction network
"PRP39" - pre-mRNA-processing factor 39 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
PRP39pre-mRNA-processing factor 39 (823 aa)    
Predicted Functional Partners:
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
     
 
  0.981
MAC3B
MOS4-associated complex 3B; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (525 aa)
     
 
  0.977
CDC5
Cell division cycle 5; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage (844 aa)
     
 
  0.976
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
 
  0.973
MAC3A
MOS4-associated complex 3A; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (523 aa)
     
 
  0.973
EMB2770
EMBRYO DEFECTIVE 2770; Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway (1029 aa)
     
 
  0.969
AT5G64270
Putative splicing factor (1269 aa)
     
 
  0.967
AT4G38780
Pre-mRNA-processing-splicing factor (2332 aa)
     
 
  0.966
AT1G60200
RNA-binding protein 25 (899 aa)
     
 
  0.966
AT2G43370
RNA-binding (RRM/RBD/RNP motifs) family protein; May facilitate 5’ splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron (333 aa)
     
 
  0.961
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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