• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G04130 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04130" - Tetratricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04130Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G56440.1); Has 5277 Blast hits to 4657 pr [...] (360 aa)    
Predicted Functional Partners:
AT4G30480
Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Tetratricopeptide TPR-1 (InterPro-IPR001440), Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- tetratricopetide-repeat thioredoxin-like 4 (TAIR-AT3G58620.1); Has 13751 Blast hits to 10343 protein [...] (277 aa)
     
   
  0.966
AT2G25420
Transducin family protein / WD-40 repeat family protein; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat (InterPro-IPR001680), CTLH, C-terminal LisH motif (InterPro-IPR006595), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), LisH dimerisation motif (InterPro-IPR006594), WD40 repeat, subgroup (InterPro-IPR019781); BEST Arabidopsis thaliana protein match is- WUS-interacting protein 2 (TAIR-AT3G15880.1); Has 3410 Blast hits to [...] (740 aa)
       
 
  0.958
EMB2762
CCAAT-binding factor; EMBRYO DEFECTIVE 2762 (EMB2762); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CCAAT-binding factor (InterPro-IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (577 aa)
     
   
  0.932
AT5G24840
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family (251 aa)
   
   
  0.923
AT5G17660
tRNA (guanine-N-7) methyltransferase; Its function is described as tRNA (guanine-N7-)-methyltransferase activity; Involved in tRNA modification; Located in chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- tRNA (guanine-N-7) methyltransferase (InterPro-IPR003358); BEST Arabidopsis thaliana protein match is- tRNA (guanine-N-7) methyltransferase (TAIR-AT5G24840.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Euk [...] (312 aa)
   
   
  0.923
AT2G45730
Eukaryotic initiation factor 3 gamma subunit family protein; Its function is described as translation initiation factor activity; Involved in translational initiation, regulation of translational initiation; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Eukaryotic initiation factor 3, gamma subunit (InterPro-IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro-IPR017423); Has 402 Blast hits to 378 proteins in 203 species- Archae - 0; Bacteria - 4; M [...] (446 aa)
     
      0.917
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
   
  0.912
AT2G34357
ARM repeat superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 20 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Armadillo-type fold (InterPro-IPR016024), Domain of unknown function, NUC173 (InterPro-IPR012978); BEST Arabidopsis thaliana protein match is- ARM repeat superfamily protein (TAIR-AT4G23540.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - [...] (1280 aa)
     
        0.912
AT3G09720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; Located in cellular_component unknown; Expressed in 20 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), Helicase, superfami [...] (541 aa)
     
   
  0.909
AT3G02060
ATP-dependent DNA helicase At3g02060, chloroplastic; DEAD/DEAH box helicase, putative; Its function is described as in 6 functions; Involved in DNA repair, regulation of transcription, DNA-dependent; Located in chloroplast; Expressed in 16 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Transcription-repair-coupling factor (InterPro-IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), Transcription factor CarD (InterPro-IPR003711), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-termina [...] (823 aa)
     
   
  0.909
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]