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AT1G04140 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04140" - Transducin family protein / WD-40 repeat family protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G04140Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Involved in biological_process unknown; Located in chloroplast; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat, subgroup [...] (793 aa)    
Predicted Functional Partners:
TRO
Protein TRAUCO; Trithorax-group gene homolog required for early embryogenesis. Required for the expression of FLC and FLC homologs and represses flowering. Required for proper leaf growth and development. Part of COMPASS-like complexes responsible for H3K4 trimethylation, but not for di- or mono-methylation of histone H3 ’Lys-4’. Binds to target loci chromatin, increasing H3K4 trimethylation and causing activation of the gene (509 aa)
       
 
  0.842
AT3G21060
Transducin/WD40 repeat-like superfamily protein; Promotes the expression of FLC and FLC homologs to repress the floral transition (547 aa)
     
 
  0.823
AT3G18190
TCP-1/cpn60 chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (536 aa)
     
 
  0.718
AT5G26360
TCP-1/cpn60 chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin; Belongs to the TCP-1 chaperonin family (555 aa)
     
      0.710
TCP-1
T-complex protein 1 alpha subunit; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (545 aa)
     
 
  0.704
AT3G11830
TCP-1/cpn60 chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin; Belongs to the TCP-1 chaperonin family (557 aa)
       
      0.700
At3g16830
Topless-related protein 2; Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity) (1131 aa)
     
   
  0.665
AT5G20890
TCP-1/cpn60 chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (527 aa)
     
      0.658
AT2G03430
Ankyrin repeat family protein; Involved in biological_process unknown; Located in cell wall; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ankyrin repeat-containing domain (InterPro-IPR020683), Ankyrin repeat (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- ankyrin repeat protein (TAIR-AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species- Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source- NCBI BLink) (240 aa)
     
 
  0.657
F2P16.14
Topless-related protein 3; Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity) (1134 aa)
           
  0.649
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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