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AT1G04230 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04230" - Uncharacterized protein unannotated coding sequence from BAC F19P19 in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G04230Uncharacterized protein unannotated coding sequence from BAC F19P19; Protein of unknown function (DUF2361); Contains the following InterPro domains- Protein of unknown function DUF2361 (InterPro-IPR019310); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF2361) (TAIR-AT5G43720.1); Has 1174 Blast hits to 818 proteins in 194 species- Archae - 0; Bacteria - 26; Metazoa - 566; Fungi - 310; Plants - 87; Viruses - 6; Other Eukaryotes - 179 (source- NCBI BLink) (325 aa)    
Predicted Functional Partners:
AT5G54910
DEA(D/H)-box RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; Involved in biological_process unknown; Located in nucleolus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA [...] (739 aa)
     
 
  0.917
AT1G12650
rRNA biogenesis RRP36-like protein; Unknown protein; Contains the following InterPro domains- Protein of unknown function DUF947 (InterPro-IPR009292); Has 700 Blast hits to 631 proteins in 192 species- Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source- NCBI BLink) (248 aa)
     
   
  0.917
AT5G40530
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Probable methyltransferase required to silence rDNA (301 aa)
     
 
  0.913
AT1G07840
Uncharacterized protein At1g07840; Sas10/Utp3/C1D family; Contains the following InterPro domains- Sas10/Utp3/C1D (InterPro-IPR007146); BEST Arabidopsis thaliana protein match is- Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR-AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (312 aa)
     
   
  0.909
AT2G44860
Probable ribosome biogenesis protein RLP24; Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles (159 aa)
     
      0.908
AT4G03180
Uncharacterized protein At4g03180; Contains the following InterPro domains- rRNA processing (InterPro-IPR013730); Has 898 Blast hits to 687 proteins in 142 species- Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source- NCBI BLink) (185 aa)
     
   
  0.908
AT5G61330
Similarity to apoptosis antagonizing transcription factor; rRNA processing protein-related; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- TRAUB (InterPro-IPR012617); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (436 aa)
     
   
  0.908
AT5G60990
DEA(D/H)-box RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-termin [...] (456 aa)
     
      0.905
AT4G34910
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; Located in cellular_component unknown; Expressed in 19 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), Helicase, superfami [...] (626 aa)
     
      0.905
PPAN
PETER PAN-like protein; May play a role in cell growth, differentiation and cell cycle progression (346 aa)
     
        0.905
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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