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AT1G04230 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04230" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04230Uncharacterized protein (325 aa)    
Predicted Functional Partners:
AT5G04600
RNA recognition motif-containing protein (222 aa)
     
        0.787
AT3G22660
rRNA processing protein-related; Required for the processing of the 27S pre-rRNA (293 aa)
     
        0.787
AT1G12650
Uncharacterized protein (248 aa)
     
        0.774
AT2G40430
Uncharacterized protein (449 aa)
     
        0.761
AT2G43110
Uncharacterized protein (288 aa)
     
        0.707
CBP20
CAP-binding protein 20; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structur [...] (257 aa)
       
      0.629
AT5G27140
NOP56-like pre RNA processing ribonucleoprotein; Required for 60S ribosomal subunit biogenesis (445 aa)
     
      0.628
AT5G27120
Putative nucleolar protein 5-1; Required for 60S ribosomal subunit biogenesis (533 aa)
     
      0.628
AT3G05060
Putative nucleolar protein 5-2; Required for 60S ribosomal subunit biogenesis (533 aa)
     
      0.628
EDA14
EMBRYO SAC DEVELOPMENT ARREST 14; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
        0.612
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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