• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G04350 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04350" - 2-oxoglutarate in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G043502-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family (360 aa)    
Predicted Functional Partners:
AT3G22970
Protein of unknown function (DUF506) ; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Contains the following InterPro domains- Protein of unknown function DUF506, plant (InterPro-IPR006502); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF506) (TAIR-AT4G14620.1); Has 397 Blast hits to 394 proteins in 24 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink) (370 aa)
           
  0.700
AT1G45688
Uncharacterized protein At1g45688; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in plasma membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species- Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source- NCBI BLink) (342 aa)
           
  0.700
AT3G04760
Pentatricopeptide repeat-containing protein At3g04760, chloroplastic; Pentatricopeptide repeat (PPR-like) superfamily protein; Involved in biological_process unknown; Located in chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR-AT1G09900.1); Has 62164 Blast hits to 15231 proteins in 315 species- Archae - 6; Bacteria - 70; Metazoa - 1026; Fungi - 1135; Plants - 575 [...] (602 aa)
     
   
  0.679
AT5G20050
Probable receptor-like protein kinase At5g20050; Protein kinase superfamily protein; Its function is described as kinase activity; Involved in protein amino acid phosphorylation; Located in endomembrane system; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein kinase, ATP binding site (InterPro-IPR017441), Protein kinase, catalytic domain (InterPro-IPR000719), Serine/threonine-protein kinase-like domain (InterPro-IPR017442), Protein kinase-like domain (InterPro-IPR011009), Serine/threonine-protein kinase, active site ( [...] (452 aa)
           
  0.670
At1g70530
Cysteine-rich RLK (RECEPTOR-like protein kinase) 3; Encodes a cysteine-rich receptor-like protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CRK subfamily (646 aa)
           
  0.670
AT1G68400
Leucine-rich repeat transmembrane protein kinase family protein; Its function is described as protein serine/threonine kinase activity, kinase activity, ATP binding; Involved in transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; Located in endomembrane system; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein kinase, ATP binding site (InterPro-IPR017441), Protein kinase, catalytic domain (InterPro-IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (In [...] (670 aa)
           
  0.670
STN7
Serine/threonine-protein kinase STN7, chloroplastic; Serine/threonine protein kinase required for state transition by phosphorylating light-harvesting complex II outer antennae (LCHII). State transition plays a central role in response to environmental changes and allows to adjust to changing light conditions via the redistribution of light excitation energy between photosystem II (PSII) and photosystem I (PSI). Phosphorylates the minor light harvesting protein LHCB4.2/CP29 and is involved in the light-dependent phosphorylation of TSP9. Acts as a key component of the long-term response [...] (562 aa)
     
        0.638
AOR
NADPH-dependent alkenal/one oxidoreductase, chloroplastic; Reduces the double bond in short-chain unsaturated carbonyls. Acts preferentially on alpha,beta- unsaturated ketones rather on alpha,beta-undaturated aldehydes. Has no activity with (E)-2-hexenal and (E)-2- pentenal. Contributes to detoxify stromal reactive carbonyls produced under oxidative stress; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily (386 aa)
     
        0.601
AT5G10530
Concanavalin A-like lectin protein kinase family protein; Promotes hydrogen peroxide H(2)O(2) production and cell death; In the N-terminal section; belongs to the leguminous lectin family (651 aa)
           
  0.570
AT3G55550
Concanavalin A-like lectin protein kinase family protein; Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae; In the C-terminal section; belongs to the protein kinase superfamily. Ser/Thr protein kinase family (684 aa)
           
  0.567
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]