• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G04420 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04420" - NAD(P)-linked oxidoreductase superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04420NAD(P)-linked oxidoreductase superfamily protein; Its function is described as oxidoreductase activity, aldo-keto reductase activity; Involved in oxidation reduction; Located in chloroplast, chloroplast stroma, chloroplast envelope; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Aldo/keto reductase (InterPro-IPR001395); BEST Arabidopsis thaliana protein match is- potassium channel beta subunit 1 (TAIR-AT1G04690.1); Has 28623 Blast hits to 28597 proteins in 2530 species- Archae - 619; Bacteria - 18927; Metazoa - 1497; Fungi [...] (412 aa)    
Predicted Functional Partners:
emb1473
50S ribosomal protein L13, chloroplastic; Embryo defective 1473 (emb1473); Its function is described as structural constituent of ribosome; Involved in translation, embryo development ending in seed dormancy; Located in thylakoid, ribosome, chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13, bacterial-type (InterPro-IPR005823), Ribosomal protein L13 (InterPro-IPR005822); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G01790.2); Has [...] (241 aa)
   
        0.969
AT4G02530
Thylakoid lumenal 16.5 kDa protein, chloroplastic; Chloroplast thylakoid lumen protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in 6 components; Expressed in 22 plant structures; Expressed during 13 growth stages; Has 54 Blast hits to 54 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (216 aa)
     
        0.968
AT3G54210
50S ribosomal protein L17, chloroplastic; This protein binds directly to 23S ribosomal RNA (211 aa)
     
        0.950
RPL24
Translation protein SH3-like family protein; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (198 aa)
     
        0.945
PSRP5
Plastid-specific 50S ribosomal protein 5 (PSRP5); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; Expressed in 22 plant structures; Expressed during 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (148 aa)
     
        0.944
PSRP4
30S ribosomal protein S31, chloroplastic; Plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete; Belongs to the bacterial ribosomal protein bTHX family (118 aa)
     
        0.943
AT2G36145
Uncharacterized protein At2g36145; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast thylakoid membrane, chloroplast stroma, chloroplast; Expressed in 19 plant structures; Expressed during 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (186 aa)
     
        0.942
CPSRP54
Signal recognition particle 54 kDa protein, chloroplastic; Involved in cotranslational and post-translational sorting of thylakoid proteins. Binds GTP specifically. Activates the GTPase activity of CPFTSY when bound together. Required for light-harvesting chlorophyll a/b-binding protein (LHCP) integration into thylakoids (564 aa)
     
        0.904
EMB3137
30S ribosomal protein S13, chloroplastic; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; Belongs to the universal ribosomal protein uS13 family (169 aa)
     
        0.883
APE2
Triose phosphate/phosphate translocator TPT, chloroplastic; Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light; Belongs to the TPT transporter fami [...] (415 aa)
     
        0.833
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]