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AT1G04480.1 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04480.1" - 60S ribosomal protein L23 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04480.160S ribosomal protein L23 (140 aa)    
Predicted Functional Partners:
RPL16A
60S ribosomal protein L11-1; Binds to 5S ribosomal RNA (182 aa)
   
  0.999
AT5G45775.2
60S ribosomal protein L11-2; Binds to 5S ribosomal RNA (182 aa)
   
  0.999
AT5G67510
60S ribosomal protein L26-2 (146 aa)
   
  0.999
RPL5A
Ribosomal protein L5; Binds to 5S ribosomal RNA (301 aa)
   
  0.999
RPL16B
Ribosomal protein L16B; Binds to 5S ribosomal RNA (182 aa)
   
  0.999
RPL5B
Ribosomal protein L5 B; Binds to 5S ribosomal RNA (301 aa)
   
  0.999
AT3G58700.1
60S ribosomal protein L11-2 (182 aa)
   
  0.999
AT1G67430
60S ribosomal protein L17-2 (175 aa)
   
  0.999
AT3G07110
60S ribosomal protein L13a-1 (207 aa)
   
  0.999
AT3G24830
60S ribosomal protein L13a-2 (206 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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