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AT1G04480.1 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04480.1" - Ribosomal protein L14p/L23e family protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G04480.1Ribosomal protein L14p/L23e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L14b/L23e (InterPro-IPR000218), Ribosomal protein L14 conserved site (InterPro-IPR019972); BEST Arabidopsis thaliana protein match is- Ribosomal protein L14p/L23e family protein (TAIR-AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species- Archae - 321; Bacteria - 5427; Metazoa - 3 [...] (140 aa)    
Predicted Functional Partners:
AT3G60770
Ribosomal protein S13/S15; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein S13/S15, N-terminal (InterPro-IPR012606), Ribosomal protein S15 (InterPro-IPR000589), S15/NS1, RNA-binding (InterPro-IPR009068); BEST Arabidopsis thaliana protein match is- ribosomal protein S13A (TAIR-AT4G00100.1); Has 1099 Blast hits to 1099 pr [...] (151 aa)
   
 
  0.994
RPS13A
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development; Belongs to the universal ribosomal protein uS15 family (151 aa)
   
 
  0.993
AT1G67430
Ribosomal protein L22p/L17e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in 6 components; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L22/L17 (InterPro-IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro-IPR005721), Ribosomal protein L22/L17, conserved site (InterPro-IPR018260); BEST Arabidopsis thaliana protein match is- Ribosomal protein L22p/L17e family protein (TAIR-AT1G27400.1); Has 2094 Blast hits to 2094 protein [...] (175 aa)
 
 
  0.993
AT1G27400
Ribosomal protein L22p/L17e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L22/L17 (InterPro-IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro-IPR005721), Ribosomal protein L22/L17, conserved site (InterPro-IPR018260); BEST Arabidopsis thaliana protein match is- Ribosomal protein L22p/L17e [...] (176 aa)
 
 
  0.993
AT3G49910
Translation protein SH3-like family protein; Its function is described as structural constituent of ribosome; Involved in response to cold, translation; Located in 8 components; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation protein SH3-like (InterPro-IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro-IPR005756), Ribosomal protein L24, SH3-like (InterPro-IPR014723), Ribosomal protein L24/L26, conserved site (InterPro-IPR005825), KOW (InterPro-IPR005824); BEST Arabidopsis thaliana protein match is- [...] (146 aa)
   
 
  0.992
RPL5A
60S ribosomal protein L5-1; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
 
  0.992
RPL5B
60S ribosomal protein L5-2; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
 
  0.992
AT5G67510
Translation protein SH3-like family protein; Its function is described as structural constituent of ribosome, protein binding; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation protein SH3-like (InterPro-IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro-IPR005756), Ribosomal protein L24, SH3-like (InterPro-IPR014723), Ribosomal protein L24/L26, conserved site (InterPro-IPR005825), KOW ( [...] (146 aa)
   
 
  0.992
RPL23AB
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA (154 aa)
 
 
  0.991
EMB2207
Encodes a cytoplasmic ribosomal protein; Belongs to the universal ribosomal protein uL3 family (389 aa)
 
 
  0.991
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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