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STRINGSTRING
AT1G04500 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04500" - Uncharacterized protein At1g04500 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G04500Uncharacterized protein At1g04500; CCT motif family protein; Contains the following InterPro domains- CCT domain (InterPro-IPR010402); BEST Arabidopsis thaliana protein match is- CCT motif family protein (TAIR-AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species- Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source- NCBI BLink) (386 aa)    
Predicted Functional Partners:
AT3G29180
Protein of unknown function (DUF1336); Its function is described as molecular_function unknown; Involved in N-terminal protein myristoylation; Located in plasma membrane; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Protein of unknown function DUF1336 (InterPro-IPR009769); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF1336) (TAIR-AT5G39430.1); Has 326 Blast hits to 326 proteins in 26 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 47 (s [...] (513 aa)
           
  0.711
AT3G13990
Kinase-related protein of unknown function (DUF1296); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cytosol, nucleus; Expressed in cultured cell; Contains the following InterPro domains- Protein of unknown function DUF1296 (InterPro-IPR009719); BEST Arabidopsis thaliana protein match is- Kinase-related protein of unknown function (DUF1296) (TAIR-AT3G07660.1); Has 567 Blast hits to 496 proteins in 118 species- Archae - 0; Bacteria - 10; Metazoa - 222; Fungi - 75; Plants - 162; Viruses - 3; Other Eukaryotes - 95 (source- NCBI BLink) (848 aa)
           
  0.711
AT4G30830
Protein of unknown function, DUF593; Contains the following InterPro domains- Protein of unknown function DUF593 (InterPro-IPR007656); BEST Arabidopsis thaliana protein match is- Protein of unknown function, DUF593 (TAIR-AT2G24140.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (363 aa)
           
  0.710
AT4G27660
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (182 aa)
           
  0.710
AT4G00390
DNA-binding storekeeper protein-related transcriptional regulator; Its function is described as transcription regulator activity; Located in nucleolus; Expressed in seed; Expressed during E expanded cotyledon stage; Contains the following InterPro domains- Protein of unknown function DUF573 (InterPro-IPR007592); BEST Arabidopsis thaliana protein match is- DNA-binding storekeeper protein-related transcriptional regulator (TAIR-AT1G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryot [...] (364 aa)
           
  0.710
AT3G54530
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G54520.1); Has 159 Blast hits to 159 proteins in 50 species- Archae - 2; Bacteria - 26; Metazoa - 55; Fungi - 5; Plants - 20; Viruses - 2; Other Eukaryotes - 49 (source- NCBI BLink) (332 aa)
           
  0.710
AT3G54520
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G54530.1); Has 72 Blast hits to 70 proteins in 20 species- Archae - 0; Bacteria - 5; Metazoa - 8; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 39 (source- NCBI BLink) (299 aa)
           
  0.710
AT3G02125
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in pollen tube; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G39200.1); Has 2247 Blast hits to 1434 proteins in 202 species- Archae - 4; Bacteria - 111; Metazoa - 942; Fungi - 239; Plants - 140; Viruses - 37; Other Eukaryotes - 774 (source- NCBI BLink) (355 aa)
           
  0.710
AT3G01015
TPX2 (targeting protein for Xklp2) protein family; Contains the following InterPro domains- Xklp2 targeting protein (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- TPX2 (targeting protein for Xklp2) protein family (TAIR-AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (488 aa)
           
  0.710
AT2G38823
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G54520.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (258 aa)
           
  0.710
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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