• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G04660 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04660" - Uncharacterized protein At1g04660 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04660Uncharacterized protein At1g04660; Glycine-rich protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 8 plant structures; Expressed during 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 360 Blast hits to 349 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (212 aa)    
Predicted Functional Partners:
AT2G29370
NAD(P)-binding Rossmann-fold superfamily protein; Its function is described as oxidoreductase activity, binding, catalytic activity; Involved in oxidation reduction, metabolic process; Located in cellular_component unknown; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Short-chain dehydrogenase/reductase, conserved site (InterPro-IPR020904), NAD(P)-binding domain (InterPro-IPR016040), Glucose/ribitol dehydrogenase (InterPro-IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro-IPR002198); BEST Arabidopsis thaliana [...] (268 aa)
           
  0.951
AT2G34700
Pollen Ole e 1 allergen and extensin family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 6 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Pollen Ole e 1 allergen/extensin (InterPro-IPR006041); BEST Arabidopsis thaliana protein match is- arabinogalactan protein 31 (TAIR-AT1G28290.1); Has 194 Blast hits to 194 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viru [...] (175 aa)
     
   
  0.830
M17
Glycine-rich protein / late embryogenesis abundant protein (M17); Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis (280 aa)
           
  0.791
PAP85
Vicilin-like seed storage protein At3g22640; Seed storage protein (486 aa)
           
  0.770
AT4G19820
Glycosyl hydrolase family protein with chitinase insertion domain; Its function is described as cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in 8 plant structures; Expressed during LP.04 four leaves visible, petal differentiation and expansion stage; Contains the following InterPro domains- Glycoside hydrolase, family 18, catalytic domain (InterPro-IPR001223), Chitinase II (InterPro-IPR011583), Glycoside hydrolase, catalytic core (InterP [...] (366 aa)
           
  0.669
AT4G19720
Glycosyl hydrolase family protein with chitinase insertion domain; Its function is described as cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; Involved in carbohydrate metabolic process; Located in cellular_component unknown; Expressed in root; Contains the following InterPro domains- Glycoside hydrolase, family 18, catalytic domain (InterPro-IPR001223), Chitinase II (InterPro-IPR011583), Glycoside hydrolase, catalytic core (InterPro-IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro-IPR013781); BEST Arabid [...] (363 aa)
           
  0.669
AT4G36600
Late embryogenesis abundant (LEA) protein; Contains the following InterPro domains- Late embryogenesis abundant protein, group 4 (InterPro-IPR004238); BEST Arabidopsis thaliana protein match is- late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR-AT2G18340.1); Has 1483 Blast hits to 893 proteins in 345 species- Archae - 4; Bacteria - 836; Metazoa - 93; Fungi - 47; Plants - 352; Viruses - 1; Other Eukaryotes - 150 (source- NCBI BLink) (353 aa)
           
  0.569
HSI2
B3 domain-containing transcription repressor VAL1; HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar leve [...] (790 aa)
           
  0.567
NF-YB6
Nuclear transcription factor Y subunit B-6; Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway; Belongs to the NFYB/HAP3 subunit family (234 aa)
           
  0.561
DOG1
Protein DELAY OF GERMINATION 1; Required for the induction of seed dormancy. The level of DOG1 protein in freshly harvested seeds determines the level of seed dormancy. Determines the temperature window for germination by regulating the expression of micropylar endosperm-weakening genes through temperature control of the gibberellins metabolism. Regulates seed dormancy and flowering time through an influence on levels of microRNAs miR156 and miR172. Regulator of seed maturation interfering with abscisic acid signaling components and activating ABI5. In cv. Cvi-1, enhances glucose induc [...] (291 aa)
           
  0.553
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]