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AT1G04680 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04680" - Pectin lyase-like superfamily protein in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G04680Pectin lyase-like superfamily protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT4G13710.1); Has 1635 Blast hits to 1625 pro [...] (431 aa)    
Predicted Functional Partners:
AT5G17200
Pectin lyase-like superfamily protein; Its function is described as polygalacturonase activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in leaf whorl, sperm cell, sepal, flower, pedicel; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pec [...] (421 aa)
       
  0.731
CRL1
NAD(P)-binding Rossmann-fold superfamily protein; Its function is described as coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; Involved in response to cadmium ion, lignin biosynthetic process; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- NAD-dependent epimerase/dehydratase (InterPro-IPR001509), NAD(P)-binding domain (InterPro-IPR016040); BEST Arabidopsis thaliana protein match is- NAD(P)-binding Rossmann-fold superfamily protein (TAIR-AT2G33600.1); Ha [...] (321 aa)
           
  0.731
PME31
Pectin methylesterase 31; Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification; Belongs to the pectinesterase family (317 aa)
 
   
  0.720
AT3G47400
Plant invertase/pectin methylesterase inhibitor superfamily; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the C-terminal section; belongs to the pectinesterase family (594 aa)
 
 
  0.717
AT5G14650
Pectin lyase-like superfamily protein; Its function is described as polygalacturonase activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in 7 plant structures; Expressed during F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Glycoside hydrolase, family 28 (InterPro-IPR000743), Pectin lyase fold (InterPro-IPR012334), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein matc [...] (435 aa)
       
  0.715
ADPG1
Pectin lyase-like superfamily protein; Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding (431 aa)
       
  0.711
AT3G43270
Plant invertase/pectin methylesterase inhibitor superfamily; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the N-terminal section; belongs to the PMEI family (527 aa)
 
   
  0.709
PME3
Pectinesterase/pectinesterase inhibitor 3; Encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism; In the C-terminal section; belongs to the pectinesterase family (592 aa)
       
  0.707
PME2
Pectin methylesterase 2; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the N-terminal section; belongs to the PMEI family (587 aa)
       
  0.707
AT3G59850
Pectin lyase-like superfamily protein; Its function is described as polygalacturonase activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in embryo, pedicel; Expressed during 4 anthesis, C globular stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT2G43870.1); H [...] (388 aa)
       
  0.687
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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