STRINGSTRING
AT1G04900 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04900" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04900Uncharacterized protein (442 aa)    
Predicted Functional Partners:
AT4G15640
Uncharacterized protein (390 aa)
     
        0.503
AT5G27395
Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (313 aa)
     
        0.497
AT4G02930
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (454 aa)
     
        0.480
AT5G11240
transducin/WD40 domain-containing protein (615 aa)
     
        0.479
AT4G35850
Pentatricopeptide repeat-containing protein (444 aa)
     
        0.471
AT2G19385
Zinc ion binding (275 aa)
     
        0.470
PPR596
PENTATRICOPEPTIDE REPEAT 596 (596 aa)
     
        0.470
AT3G13940
DNA binding;DNA-directed RNA polymerases (442 aa)
     
        0.467
AT3G13160
Pentatricopeptide repeat-containing protein (394 aa)
     
        0.464
AT5G06550
Uncharacterized protein (502 aa)
     
        0.458
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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