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AT1G04990 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04990" - Zinc finger C-x8-C-x5-C-x3-H type family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04990Zinc finger C-x8-C-x5-C-x3-H type family protein; Possesses RNA-binding and ribonuclease activities in vitro (404 aa)    
Predicted Functional Partners:
AT1G02080
Transcription regulators; Its function is described as transcription regulator activity; Located in membrane; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- CCR4-Not complex component, Not1 (InterPro-IPR007196); Has 1434 Blast hits to 680 proteins in 246 species- Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source- NCBI BLink) (2431 aa)
       
 
  0.635
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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