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AT1G05070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05070" - Transmembrane protein, putative in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G05070Transmembrane protein, putative (DUF1068); Protein of unknown function (DUF1068); Contains the following InterPro domains- Protein of unknown function DUF1068 (InterPro-IPR010471); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF1068) (TAIR-AT2G32580.1); Has 119 Blast hits to 119 proteins in 15 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (184 aa)    
Predicted Functional Partners:
AT1G63810
Uncharacterized protein At1g63810; Contains the following InterPro domains- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1053 aa)
     
 
  0.991
AT3G06530
Uncharacterized protein At3g06530; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
     
 
  0.982
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
 
  0.981
TOZ
Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development (876 aa)
     
 
  0.981
AT4G04940
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Involved in rRNA processing; Located in CUL4 RING ubiquitin ligase complex; Expressed in 20 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), Small-subunit processome, Utp21 (InterPro-IPR007319), WD40/YVTN repeat- [...] (910 aa)
     
 
  0.981
AT1G69070
Nucleolar-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nop14-like protein (InterPro-IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species- Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source- NCBI BLink) (901 aa)
     
 
  0.979
AT3G57940
Domain of unknown function (DUF1726) ;Putative ATPase (DUF699); RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.974
AT1G10490
Domain of unknown function (DUF1726) ;Putative ATPase (DUF699); RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.974
PWP2
Periodic tryptophan protein 2; Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA. Required for guard cell functions (900 aa)
     
 
  0.967
AT3G21540
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Located in nucleolus, heterotrimeric G-protein complex; Expressed in 20 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), Small-subunit processome, Utp12 (InterPro-IPR007148), G-protein beta WD-40 repeat, region (InterPro-IPR020472), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain ( [...] (955 aa)
     
 
  0.962
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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