STRINGSTRING
AT1G05090 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05090" - Dentin sialophosphoprotein-related in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G05090Dentin sialophosphoprotein-related (706 aa)    
Predicted Functional Partners:
AT3G04440
Plasma-membrane choline transporter family protein (482 aa)
           
  0.987
AT3G03700
Plasma-membrane choline transporter family protein (482 aa)
           
  0.987
HISN6B
HISTIDINE BIOSYNTHESIS 6B; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (417 aa)
           
  0.914
HPA1
Histidinol-phosphate aminotransferase (417 aa)
           
  0.875
AT3G61690
Nucleotidyltransferase (1303 aa)
     
   
  0.711
RIF10
Resistant to inhibition with FSM 10; Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3’-end processing of mRNAs and 3’-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3’-5’ degrading phosphorylase. May be required for plastid ribosome assembly and non-coding RNA biogenesis and accumulation. Seems not required for efficient translation (922 aa)
           
  0.557
At1g53165
Map 4 kinase alpha1 (688 aa)
     
        0.406
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (12%) [HD]