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AT1G05150 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05150" - Calcium-binding tetratricopeptide family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G05150Calcium-binding tetratricopeptide family protein (808 aa)    
Predicted Functional Partners:
AT4G13960
Putative F-box/LRR-repeat protein (434 aa)
           
  0.779
RLP50
Receptor like protein 50 (891 aa)
           
  0.777
LCR49
Defensin-like protein 50 (80 aa)
           
  0.733
SHM6
Serine hydroxymethyltransferase 6; Catalyzes the interconversion of serine and glycine (599 aa)
     
   
  0.684
LCR48
Defensin-like protein 51 (80 aa)
           
  0.678
AT2G31990
Exostosin-like protein; Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan (479 aa)
           
  0.678
AT4G14050
Pentatricopeptide repeat-containing protein (612 aa)
           
  0.672
RLP48
Receptor like protein 48 (725 aa)
           
  0.670
AT3G02880
Putative inactive receptor kinase (627 aa)
           
  0.670
PUP18
Purine permease 18 (390 aa)
           
  0.670
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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