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emb2394 protein (Arabidopsis thaliana) - STRING interaction network
"emb2394" - 50S ribosomal protein L6, chloroplastic in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
emb239450S ribosomal protein L6, chloroplastic; This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center (223 aa)    
Predicted Functional Partners:
AT2G43030
50S ribosomal protein L3-1, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
   
 
  0.999
RPL9
50S ribosomal protein L9, chloroplastic; Plastid ribosomal protein CL9 (197 aa)
     
 
  0.999
emb1473
50S ribosomal protein L13, chloroplastic; Embryo defective 1473 (emb1473); Its function is described as structural constituent of ribosome; Involved in translation, embryo development ending in seed dormancy; Located in thylakoid, ribosome, chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13, bacterial-type (InterPro-IPR005823), Ribosomal protein L13 (InterPro-IPR005822); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G01790.2); Has [...] (241 aa)
 
 
  0.998
RPL4
50S ribosomal protein L4, chloroplastic; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation; Belongs to the universal ribosomal protein uL4 family (282 aa)
   
 
  0.998
RPS9
Ribosomal protein S9, nuclear encoded component of the chloroplast ribosome (208 aa)
   
 
  0.997
PRPL11
50S ribosomal protein L11, chloroplastic; Mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 (222 aa)
 
 
  0.997
AT5G65220
50S ribosomal protein L29, chloroplastic; Ribosomal L29 family protein ; Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis; Located in ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L29 (InterPro-IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NC [...] (173 aa)
   
 
  0.997
EMB3105
50S ribosomal protein L18, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (170 aa)
     
      0.996
EMB3137
30S ribosomal protein S13, chloroplastic; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; Belongs to the universal ribosomal protein uS13 family (169 aa)
 
 
  0.996
emb2184
50S ribosomal protein L31, chloroplastic; Binds the 23S rRNA (144 aa)
   
 
  0.996
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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