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emb2394 protein (Arabidopsis thaliana) - STRING interaction network
"emb2394" - Embryo defective 2394 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emb2394Embryo defective 2394; This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center (223 aa)    
Predicted Functional Partners:
AT4G01310
50S ribosomal protein L5; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (262 aa)
   
  0.999
PRPL11
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (222 aa)
 
  0.999
AT2G43030
50S ribosomal protein L3-1; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
 
  0.999
EMB3105
EMBRYO DEFECTIVE 3105; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (170 aa)
 
  0.999
RPL4
Ribosomal protein L4; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation (282 aa)
 
  0.999
AT5G65220
50S ribosomal protein L29 (173 aa)
   
  0.999
emb1473
Embryo defective 1473 (241 aa)
   
  0.999
RPL14
Ribosomal protein L14; Binds to 23S rRNA (122 aa)
 
  0.999
RPL24
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (PubMed-22900828) (198 aa)
   
  0.999
RPL15
Ribosomal protein L15 (277 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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