STRINGSTRING
AT1G05340 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05340" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G05340Uncharacterized protein (72 aa)    
Predicted Functional Partners:
AT1G19020
Uncharacterized protein (86 aa)
     
   
  0.725
AT3G10320
Glycosyltransferase family 61 protein (494 aa)
     
   
  0.701
AT5G40690
Uncharacterized protein (210 aa)
     
   
  0.678
AT1G18980
RmlC-like cupins superfamily protein; May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved (220 aa)
           
  0.671
AT1G05430
Uncharacterized protein (269 aa)
           
  0.671
AT1G57630
Toll-Interleukin-Resistance domain-containing protein (172 aa)
     
   
  0.655
AT2G28400
Uncharacterized protein (162 aa)
     
   
  0.646
AT3G26440
Uncharacterized protein (396 aa)
           
  0.631
AT2G21640
Uncharacterized protein (104 aa)
           
  0.609
AT2G32190
Uncharacterized protein (71 aa)
     
     
0.502
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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