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AT1G05440 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05440" - C-8 sterol isomerases in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G05440C-8 sterol isomerases; Its function is described as C-8 sterol isomerase activity; Involved in ergosterol biosynthetic process; Located in endoplasmic reticulum; Expressed in 14 plant structures; Expressed during 7 growth stages; Contains the following InterPro domains- ERG2/sigma1 receptor-like (InterPro-IPR006716); Has 118 Blast hits to 118 proteins in 39 species- Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 4; Plants - 21; Viruses - 1; Other Eukaryotes - 19 (source- NCBI BLink) (384 aa)    
Predicted Functional Partners:
AT5G36800.1
Unknown protein; Its function is described as molecular_function unknown; Involved in N-terminal protein myristoylation; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (183 aa)
     
        0.925
AT5G36710
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G36800.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (183 aa)
     
        0.910
AT3G26050
TPX2 (targeting protein for Xklp2) protein family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 11 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Xklp2 targeting protein (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27350.1); Has 6164 Blast hits to 2231 proteins in 307 species- Archae - 0; Bacteria - 1108; Metazoa - 883; Fungi - 695; Plants - 381; Viruses - 18; Other Eukaryotes - 3079 (source- NCBI BLink) (533 aa)
     
        0.888
AT5G40700
Transcriptional regulator ATRX-like protein; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27350.1); Has 475 Blast hits to 414 proteins in 93 species- Archae - 0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143; Viruses - 7; Other Eukaryotes - 138 (source- NCBI BLink) (303 aa)
     
        0.866
AT3G27350
Transcriptional regulator ATRX-like protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G40700.1) (319 aa)
     
        0.866
SYP111
Syntaxin-related protein KNOLLE; Involved in cytokinesis. Acts as a cell plate-specific syntaxin, required for the fusion of vesicles at the plane of cell division (310 aa)
     
        0.838
AT3G01710
TPX2 (targeting protein for Xklp2) protein family; Contains the following InterPro domains- Xklp2 targeting protein (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27350.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (391 aa)
     
        0.807
SYP123
Syntaxin of plants 123; Vesicle trafficking protein that functions in the secretory pathway (305 aa)
     
        0.752
SYP124
Syntaxin of plants 124; Vesicle trafficking protein that functions in the secretory pathway (303 aa)
     
        0.752
SYP125
Syntaxin of plants 125; Vesicle trafficking protein that functions in the secretory pathway (298 aa)
     
        0.752
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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