• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G05650 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05650" - Pectin lyase-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G05650Pectin lyase-like superfamily protein; Its function is described as polygalacturonase activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species- Archae - 4; Bacteria - 11 [...] (394 aa)    
Predicted Functional Partners:
GONST2
Golgi nucleotide sugar transporter 2; GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen; Belongs to the nucleotide-sugar transporter family. GDP-Mannose-GMP antiporter (GMA) (TC 2.A.7.13) subfamily (375 aa)
           
  0.754
At3g09820
Adenosine kinase 1; ATP dependent phosphorylation of adenosine and other related nucleoside analogs to monophosphate derivatives. Essential to sustain methyl recycling (344 aa)
         
  0.646
STP9
Sugar transport protein 9; Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family (517 aa)
           
  0.623
STP12
Sugar transporter protein 12; Mediates an active uptake of hexoses, probably by sugar/hydrogen symport (502 aa)
           
  0.618
PHT1;2
Probable inorganic phosphate transporter 1-2; Encodes a phosphate transporter Pht1;2. Members of the Pht1 family of phosphate transporters include- Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31-341) (524 aa)
     
   
  0.587
GONST1
Golgi nucleotide sugar transporter 1; Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. Required for the luminal synthesis of a variety of plant cell surface components. Is required for the correct mannosylation of the glycosylinositol phosphoceramides (GIPC). Can indifferently transport GDP-mannose, GDP-Glucose, GDP-Fucose or GDP-Galactose in vitro (333 aa)
           
  0.580
AT1G23200
Plant invertase/pectin methylesterase inhibitor superfamily; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the C-terminal section; belongs to the pectinesterase family (554 aa)
           
  0.568
STP2
Sugar transport protein 2; Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose (498 aa)
           
  0.558
STP14
AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose (504 aa)
           
  0.552
OTC
Ornithine carbamoyltransferase, chloroplastic; Ornithine carbamoyltransferase (OTC); Its function is described as amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; Involved in cellular amino acid metabolic process; Located in chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro-IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro-IPR006130), Aspartate/ornithine c [...] (375 aa)
           
  0.477
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (17%) [HD]