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AT1G05730 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05730" - Eukaryotic protein of unknown function in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G05730Eukaryotic protein of unknown function (DUF842); Contains the following InterPro domains- Protein of unknown function DUF842, eukaryotic (InterPro-IPR008560); BEST Arabidopsis thaliana protein match is- Eukaryotic protein of unknown function (DUF842) (TAIR-AT2G31725.1); Has 245 Blast hits to 245 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 11 (source- NCBI BLink) (149 aa)    
Predicted Functional Partners:
SKB1
Protein arginine N-methyltransferase 1.5; Methylates arginine residues of myelin basic protein (MBP) in vitro. Methylates symmetrically histone H4 of the FLC chromatin to form H4R3me2s, which in turn suppresses FLC expression to induce flowering. Regulates alternative splicing by methylating spliceosomal proteins. Involved in the post- transcriptional regulation of the circadian clock; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (642 aa)
     
        0.896
AT3G01800
Ribosome recycling factor; Involved in translational termination, translation; Located in mitochondrion; Expressed in 19 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosome recycling factor, bacterial-like (InterPro-IPR015998), Ribosome recycling factor (InterPro-IPR002661); BEST Arabidopsis thaliana protein match is- ribosome recycling factor, chloroplast precursor (TAIR-AT3G63190.1); Has 7776 Blast hits to 7776 proteins in 2635 species- Archae - 0; Bacteria - 5288; Metazoa - 113; Fungi - 65; Plants - 94; Viruses - 0; Other Eukaryotes [...] (267 aa)
     
        0.864
AT3G46210
Ribosomal protein S5 domain 2-like superfamily protein; Probable component of the exosome 3’->5’ exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3’-untranslated regions (239 aa)
     
        0.862
ZEU1
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition (271 aa)
     
        0.780
AT5G11240
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Involved in biological_process unknown; Located in endomembrane system; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), Small-subunit processome, Utp12 (InterPro-IPR007148), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like [...] (615 aa)
     
        0.779
AT1G16870
Mitochondrial 28S ribosomal protein S29-related; Contains the following InterPro domains- Ribosomal protein S23/S29, mitochondrial (InterPro-IPR019368); Has 239 Blast hits to 239 proteins in 116 species- Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source- NCBI BLink) (480 aa)
     
        0.779
PUR5
Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic; Encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR) (389 aa)
     
        0.767
AT4G30830
Protein of unknown function, DUF593; Contains the following InterPro domains- Protein of unknown function DUF593 (InterPro-IPR007656); BEST Arabidopsis thaliana protein match is- Protein of unknown function, DUF593 (TAIR-AT2G24140.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (363 aa)
           
  0.766
AT4G27660
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (182 aa)
           
  0.766
AT4G00390
DNA-binding storekeeper protein-related transcriptional regulator; Its function is described as transcription regulator activity; Located in nucleolus; Expressed in seed; Expressed during E expanded cotyledon stage; Contains the following InterPro domains- Protein of unknown function DUF573 (InterPro-IPR007592); BEST Arabidopsis thaliana protein match is- DNA-binding storekeeper protein-related transcriptional regulator (TAIR-AT1G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryot [...] (364 aa)
           
  0.766
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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