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AT1G05840 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G05840" - Aspartyl protease-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G05840Aspartyl protease-like protein (485 aa)    
Predicted Functional Partners:
AT1G33050
Uncharacterized protein (693 aa)
     
        0.570
HGO
Homogentisate 1,2-dioxygenase (461 aa)
     
        0.520
ARP8
Actin-related protein 8 (471 aa)
     
 
  0.507
AT1G49180
Protein kinase-like protein; Serine/threonine protein kinase involved in autophagy. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery (408 aa)
     
 
  0.505
scpl42
Serine carboxypeptidase-like 42; Probable carboxypeptidase (473 aa)
     
 
  0.477
scpl41
Serine carboxypeptidase-like 41; Probable carboxypeptidase (469 aa)
     
 
  0.477
scpl1
Serine carboxypeptidase-like 1; Probable carboxypeptidase (441 aa)
     
 
  0.477
SCPL34
Carboxypeptidase D; Probable carboxypeptidase (499 aa)
     
 
  0.477
scpl47
Carboxypeptidase; Probable carboxypeptidase (505 aa)
     
 
  0.477
AT5G22960
Putative serine carboxypeptidase-like 54 (190 aa)
     
 
  0.477
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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