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AT1G06380 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G06380" - Ribosomal protein .1/L10e family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G06380Ribosomal protein .1/L10e family (254 aa)    
Predicted Functional Partners:
AT5G04600
RNA recognition motif-containing protein (222 aa)
     
 
  0.997
AT2G37990
Ribosome biogenesis regulatory protein-like protein; Involved in ribosome biogenesis (318 aa)
     
      0.996
AT1G50920
Nucleolar GTP-binding protein; Involved in the biogenesis of the 60S ribosomal subunit (671 aa)
     
 
  0.995
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
 
  0.994
AT3G13230
RNA-binding protein PNO1 (215 aa)
     
      0.994
AT1G10300
Nucleolar GTP-binding protein; Involved in the biogenesis of the 60S ribosomal subunit (687 aa)
     
 
  0.992
AT3G23860
GTP-binding protein-related (230 aa)
     
 
  0.992
PDE318
Pigment defective 318 (451 aa)
     
 
  0.992
SWA1
SLOW WALKER1; Essential protein required for nuclear division and organization during embryo sac development in female gametophyte, probably by promoting rRNA biogenesis essential for the progression of the mitotic division cycles during gametogenesis (PubMed-15634699, PubMed-15980260). Involved in nucleolar processing of pre-18S ribosomal RNA (PubMed-15980260) (530 aa)
     
 
  0.992
AT2G34357
ARM repeat superfamily protein (1280 aa)
     
 
  0.992
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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