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AT1G06380 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G06380" - Ribosomal protein L1p/L10e family in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G06380Ribosomal protein L1p/L10e family; Its function is described as RNA binding; Involved in RNA processing; Located in chloroplast, chloroplast envelope; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L1 (InterPro-IPR002143); BEST Arabidopsis thaliana protein match is- Ribosomal protein L1p/L10e family (TAIR-AT2G42650.1); Has 1018 Blast hits to 1018 proteins in 280 species- Archae - 3; Bacteria - 0; Metazoa - 406; Fungi - 260; Plants - 220; Viruses - 0; Other Eukaryotes - 129 (source- NCBI BLink) (254 aa)    
Predicted Functional Partners:
AT3G13230
RNA-binding KH domain-containing protein; Its function is described as RNA binding; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- K Homology, type 1, subgroup (InterPro-IPR018111), K Homology (InterPro-IPR004087); Has 734 Blast hits to 734 proteins in 323 species- Archae - 189; Bacteria - 0; Metazoa - 158; Fungi - 192; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source- NCBI BLink) (215 aa)
     
 
  0.995
SWA1
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant (530 aa)
     
 
  0.994
AT3G06530
Uncharacterized protein At3g06530; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
     
 
  0.994
AT4G04940
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Involved in rRNA processing; Located in CUL4 RING ubiquitin ligase complex; Expressed in 20 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), Small-subunit processome, Utp21 (InterPro-IPR007319), WD40/YVTN repeat- [...] (910 aa)
     
 
  0.993
EDA14
Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA; Belongs to the UTP11 family (228 aa)
     
 
  0.993
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
 
  0.993
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
 
  0.993
AT5G04600
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in nucleolus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA recognition motif (RRM)-containing protein (TAIR-AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; B [...] (222 aa)
     
 
  0.993
PWP2
Periodic tryptophan protein 2; Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA. Required for guard cell functions (900 aa)
     
 
  0.993
AT3G22660
Probable rRNA-processing protein EBP2 homolog; Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (293 aa)
     
 
  0.993
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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