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AT1G06560 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G06560" - Uncharacterized protein At1g06560 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G06560Uncharacterized protein At1g06560; NOL1/NOP2/sun family protein; Its function is described as methyltransferase activity, RNA binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro-IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro-IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro-IPR018314), Pseudouridine synthase/ar [...] (599 aa)    
Predicted Functional Partners:
AT4G15770
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
   
 
  0.994
AT5G15550
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family (433 aa)
     
 
  0.993
AT5G06360
Ribosomal protein S8e family protein; Contains the following InterPro domains- Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro-IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (260 aa)
     
 
  0.992
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
 
  0.992
AT2G40360
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression; Belongs to the WD repeat BOP1/ERB1 family (753 aa)
     
 
  0.991
AT2G44860
Probable ribosome biogenesis protein RLP24; Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles (159 aa)
     
 
  0.991
AT3G22660
Probable rRNA-processing protein EBP2 homolog; Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (293 aa)
     
 
  0.991
AT5G20600
Ribosomal RNA processing-like protein; Its function is described as molecular_function unknown; Involved in rRNA processing; Located in preribosome, small subunit precursor; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleolar, Nop52 (InterPro-IPR010301); Has 543 Blast hits to 530 proteins in 201 species- Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source- NCBI BLink) (532 aa)
     
 
  0.990
AT2G21440
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- SC35-like splicing factor 28 (TAIR-AT5G18810.1); Has 993074 Blast hits to 495169 proteins in 22089 species- Archae - 21796; Bacteria - 609929; Metazoa - 180707; Fungi - 26716; Plants - 57391; Vir [...] (1003 aa)
     
 
  0.990
AT4G25730
FtsJ-like methyltransferase family protein; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (821 aa)
   
 
  0.990
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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