STRINGSTRING
PDS1 protein (Arabidopsis thaliana) - STRING interaction network
"PDS1" - Phytoene desaturation 1 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDS1Phytoene desaturation 1 (473 aa)    
Predicted Functional Partners:
HGO
Homogentisate 1,2-dioxygenase (461 aa)
 
 
  0.997
HPT1
Homogentisate phytyltransferase 1; Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Low activity with geranylgeranyl diphosphate as substrate, but no activity with farnesyl diphosphate or solanesyl diphosphate. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation (393 aa)
         
  0.995
At3g11945
Homogentisate prenyltransferase (393 aa)
         
  0.992
TAT7
Tyrosine aminotransferase (414 aa)
     
 
  0.992
CORI3
Cystine lyase; Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones (422 aa)
     
 
  0.971
TAT3
Tyrosine aminotransferase 3 (445 aa)
     
 
  0.970
AT5G36160
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro (420 aa)
     
 
  0.969
AT4G28420
Tyrosine transaminase family protein (449 aa)
     
 
  0.969
AT4G28410
Tyrosine transaminase family protein (447 aa)
     
 
  0.969
AT4G23590
Tyrosine transaminase-like protein (424 aa)
     
 
  0.969
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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