• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G06640 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G06640" - 2-oxoglutarate in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G066402-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family (369 aa)    
Predicted Functional Partners:
AT1G04770
Tetratricopeptide repeat (TPR)-like superfamily protein; Involved in the utilization of stored sulfate under sulfur-deficient conditions (303 aa)
           
  0.895
AT4G38550
Arabidopsis phospholipase-like protein (PEARLI 4) family; Located in chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Phospholipase-like, arabidopsis (InterPro-IPR007942); BEST Arabidopsis thaliana protein match is- Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR-AT2G20950.1); Has 2973 Blast hits to 2400 proteins in 345 species- Archae - 8; Bacteria - 147; Metazoa - 1113; Fungi - 821; Plants - 590; Viruses - 45; Other Eukaryotes - 249 (source- NCBI BLink) (612 aa)
           
  0.867
SFGH
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (284 aa)
           
  0.867
GSH1
Glutamate--cysteine ligase, chloroplastic; Seems to play an important role in controlling the expression of resistance responses like the regulation of salicylic acid (SA) and phytoalexin (camalexin) production. Involved in resistance to fungal and bacterial pathogens. Required for the regulation of cell proliferation in root apical meristems through the GSH-dependent developmental pathway. Also participates in the detoxification process, the antioxidant response and is essential for embryo development and proper seed maturation; Belongs to the carboxylate-amine ligase family. Glutamat [...] (522 aa)
           
  0.619
DPL1
Dihydrosphingosine phosphate lyase; Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. May play a minor role in maintenance of sphingolipid metabolism during normal plant development and growth, but be required for maintaining sphingoid long chain bases (LCB) and their phosphorylated derivatives (LCB-P) levels when sphingolipid metabolism is perturbed. May play a role in dehydration stress (544 aa)
           
  0.553
PTR3
Protein NRT1/ PTR FAMILY 5.2; Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies; Belongs to the PTR2/POT transporter (TC 2.A.17) family (582 aa)
           
  0.467
CLPX
CLP protease regulatory subunit CLPX1, mitochondrial; ATP-dependent specificity component of the mitochondrial Clp protease. It directs the protease to specific substrates (By similarity). Can perform chaperone functions in the absence of ClpP (By similarity) (579 aa)
         
  0.465
CHR17
ISWI chromatin-remodeling complex ATPase CHR17; Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin (By similarity). Involved in the formation of nucleosome distribution patterns. Required for the maintenance of the plant vegetative phase. In association with RLT1 or RLT2 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. Necessar [...] (1072 aa)
           
  0.463
HSK
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate. Is specific for L-homoserine and cannot use other substrates such D-serine, L-serine, D- threonine and L-threonine, galactose or D-homoserine in vitro. Required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica; Belongs to the GHMP kinase family. Homoserine kinase subfamily (370 aa)
           
  0.457
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]