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NIH protein (Arabidopsis thaliana) - STRING interaction network
"NIH" - DExH-box ATP-dependent RNA helicase DExH2 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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NIHDExH-box ATP-dependent RNA helicase DExH2; Nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins (1576 aa)    
Predicted Functional Partners:
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
 
  0.651
AT3G11964
rRNA biogenesis protein RRP5; Involved in the biogenesis of ribosomal RNA (rRNA). Required for the formation of 5.8S rRNA. Required for normal development of female gametophytes (1896 aa)
     
 
  0.636
AT2G40700
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro-IP [...] (609 aa)
     
 
  0.614
AT3G16840
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-li [...] (826 aa)
     
 
  0.614
AT3G48830
Polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; Its function is described as polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; Involved in RNA processing; Located in endomembrane system; Expressed in 12 plant structures; Expressed during 7 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Poly A polymerase, head domain (InterPro-IPR002646), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677) [...] (881 aa)
   
      0.604
AT4G34910
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; Located in cellular_component unknown; Expressed in 19 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), Helicase, superfami [...] (626 aa)
     
 
  0.597
MYB92
Encodes a putative transcription factor (MYB92) (334 aa)
     
 
  0.593
AT5G60990
DEA(D/H)-box RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-termin [...] (456 aa)
     
 
  0.583
AT1G69070
Nucleolar-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nop14-like protein (InterPro-IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species- Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source- NCBI BLink) (901 aa)
     
 
  0.583
SKIP
SNW/SKI-interacting protein; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition; Belongs to the SNW family (613 aa)
     
 
  0.579
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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