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NIH protein (Arabidopsis thaliana) - STRING interaction network
"NIH" - Nuclear DEIH-boxhelicase in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
NIHNuclear DEIH-boxhelicase; May function as an ATP-dependent RNA/DNA helicase. Binds DNA in vitro in a non-specific manner (1576 aa)    
Predicted Functional Partners:
AT3G11964
RNA binding protein; Involved in the biogenesis of ribosomal RNA (rRNA). Required for the formation of 5.8S rRNA. Required for normal development of female gametophytes (1896 aa)
     
 
  0.873
AT4G32700
DNA polymerase theta subunit; Required for regulated cell division and differentiation in meristems and embryos, thus modulating adaxial-abaxial polarity. Regulates the progression of cell cycle and DNA replication (e.g. G2/M progression and intrachromosomal recombination) and the expression of genes during development, especially genes nearby the Helitron transposons (2154 aa)
   
 
  0.831
AT1G06720
BMS1 and NUC121 domain-containing protein (1147 aa)
     
 
  0.807
AT5G28740
pre-mRNA-splicing factor SYF1 (917 aa)
     
 
  0.804
AT1G10490
Uncharacterized protein; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.797
TOZ
TORMOZEMBRYO DEFECTIVE (876 aa)
     
      0.792
AT3G57940
Uncharacterized protein; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.783
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
 
  0.779
AT2G34357
ARM repeat superfamily protein (1280 aa)
     
 
  0.778
AT4G02400
U3 ribonucleoprotein-like protein (855 aa)
     
 
  0.776
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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