STRINGSTRING
AT1G06980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G06980" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G06980Uncharacterized protein (169 aa)    
Predicted Functional Partners:
RPL18AA
60S ribosomal protein L18A-1 (312 aa)
           
  0.987
AT1G07070
60S ribosomal protein L35a-1 (112 aa)
           
  0.922
AT4G34670
Ribosomal protein S3Ae (262 aa)
           
  0.866
RPSAb
40S ribosomal protein Sa-2; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (332 aa)
           
  0.863
AT4G34555
40S ribosomal protein S25-3 (108 aa)
           
  0.809
P40
40s ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (298 aa)
           
  0.734
RPL23AB
Ribosomal protein L23AB; Binds to a specific region on the 26S rRNA (154 aa)
           
  0.710
RPL23AA
Ribosomal protein L23AA; Binds to a specific region on the 26S rRNA (154 aa)
           
  0.672
CEST
Uncharacterized protein; Nuclear genome-encoded factor that participates to photosystem I (PSI) biogenesis. Cooperates with the plastid genome-encoded protein PSI assembly Ycf3 in the assembly of stable PSI units in the thylakoid membrane (PubMed-20807881). Involved in light-induced chloroplast development and growth. Involved in the plant response to abiotic and photooxidative stresses. May be involved in the suppression of photooxidative damage (PubMed-20876334) (280 aa)
           
  0.670
DRT100
DNA-DAMAGE REPAIR/TOLERATION 100; This protein is able to complement bacterial recA mutations, but its native function in the plant is not known (372 aa)
     
        0.432
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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