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AT1G07050 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07050" - Uncharacterized protein At1g07050 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G07050Uncharacterized protein At1g07050; CCT motif family protein; Contains the following InterPro domains- CCT domain (InterPro-IPR010402); BEST Arabidopsis thaliana protein match is- CCT motif family protein (TAIR-AT4G25990.1); Has 1772 Blast hits to 1772 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1711; Viruses - 0; Other Eukaryotes - 58 (source- NCBI BLink) (195 aa)    
Predicted Functional Partners:
AT4G24175
Uncharacterized protein At4g24170; Unknown protein; Contains the following InterPro domains- Uncharacterised protein family UPF0307 (InterPro-IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (306 aa)
     
 
  0.869
AT5G23240
DNAJ heat shock N-terminal domain-containing protein; May function together with HSC70 chaperone to assist protein folding and prevent protein aggregation during salt stress in the chloroplast (Probable). Involved in root development. Required for the position-dependent cell fate determination during root hair development (465 aa)
     
        0.826
PRR3
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL; Belongs to the ARR-like family (522 aa)
     
     
0.811
AT5G09570
Uncharacterized protein At5g09570/F17I14_240; Cox19-like CHCH family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- CHCH (InterPro-IPR010625); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G64400.1); Has 185 Blast hits to 185 proteins in 73 species- Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 43; Plants - 59; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink) (139 aa)
           
  0.765
AT4G33980
Uncharacterized protein; Its function is described as molecular_function unknown; Involved in response to karrikin; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; BEST Arabidopsis thaliana protein match is- cold regulated gene 27 (TAIR-AT5G42900.3) (232 aa)
     
        0.742
BBX8
B-box type zinc finger protein with CCT domain; Its function is described as sequence-specific DNA binding transcription factor activity, zinc ion binding; Located in plasma membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CCT domain (InterPro-IPR010402), Zinc finger, B-box (InterPro-IPR000315); BEST Arabidopsis thaliana protein match is- CONSTANS-like 9 (TAIR-AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Euka [...] (373 aa)
     
     
0.741
COR27
Uncharacterized protein At5g42900/MBD2_9; Cold regulated gene 27; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G33980.1); Has 74 Blast hits to 74 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (246 aa)
     
        0.740
ELF4
Protein of unknown function (DUF1313); Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Part of a corepressor complex consisting of ELF4, ELF3, and LUX involved in the transcriptional regulation of APRR9. Increases ELF3 nuclear distribution and localization in nuclear bodies. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de- etiolation) and gene expression. Mediates both entrainm [...] (111 aa)
     
   
  0.727
ATG6
Beclin-1-like protein; Required for normal plant development. Required for pollen germination. Required for autophagic activity. Required to limit the pathogen-associated cell death response. May be involved in vacuolar protein sorting. Binds to microtubules. May facilitate efficient recruitment of other ATG proteins to assemble scaffolds for autophagosome biogenesis; Belongs to the beclin family (517 aa)
           
  0.688
AT1G17665
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 15 plant structures; Expressed during 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species- Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source- NCBI BLink) (338 aa)
     
        0.688
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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