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DFO protein (Arabidopsis thaliana) - STRING interaction network
"DFO" - DSB formation in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFODSB formation (233 aa)    
Predicted Functional Partners:
AT5G03905
Iron-sulfur assembly protein IscA-like 2; Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly (By similarity) (158 aa)
           
  0.710
PRD3
Putative recombination initiation defects 3 (449 aa)
           
  0.709
MPS1
MULTIPOLAR SPINDLE 1 (385 aa)
           
  0.670
AR192
Unknown function; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (327 aa)
           
  0.649
PRD1
Protein PRD1; Required for meiotic double-strand break formation (1268 aa)
           
  0.637
AT4G23110
Insulin-like growth factor binding (148 aa)
           
  0.633
EMB1968
Embryo defective 1968; May be involved in DNA replication and thus regulate cell proliferation (341 aa)
           
  0.606
NFU3
NifU-like protein 3; Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (236 aa)
           
  0.604
ISU1
SufE/NifU family protein; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (PubMed-15507320, PubMed-17417719). First, a [2Fe-2S] cluster is transiently assembled on the scaffold protein ISCU (ISU1, ISU2 or ISU3). In a second step, the cluster is released from ISCU, transferred to a glutaredoxin, followed by the formation of mitochondrial [2Fe-2S] proteins, the synthesis of [4Fe-4S] clusters and their target-specific insertion into the reci [...] (167 aa)
           
  0.591
LBD2
LOB domain-containing protein 2 (206 aa)
           
  0.556
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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